When a engine is engineered,
everything is designed to work in unison. If someone does'nt completely understand how to "tune" an engine, then the end result is usually less power. Street engines are a huge compromise, because they need to operate well in a broad range of rpms and loads. When top fuelers are at a race, the crew tunes that engine for the conditions of the day, every day. Indy cars have variable length intake runners to allow maximum performance thru the revs. Most stock air filters flow more than enough air for mildly tuned engines. Also, the larger the volume after the filter allows for more institanious acceleration because of filtered air reserve. Intake volume,diameter,length all play a part. The reason for leaving the air cleaner housing on the ol' carbed engines is because the bottom is somewhat shaped like a velocity stack, and smoothes the air going thru the carb and into the intake. Porting is just mathcing the intake, exaust to the parts that conect to them to smooth flow. Polishing can be done in different stages, and something too smooth might hinder function. Reshaping ports and combustion chambers is something best left to proffesionals, because it is very sensitive work, and can have dramatic effects/consequenses. The exaust/mufflers on a lot of factory street engines are resrictive to pass noise emissions, although the end result of changing this is usually more aceleration and not top speed. From my experiance most bikes run
almost the same top speed after a less restrictive muffler and re-jetted, they just get there faster. The Savage engine has a "high mass' crank for a more torquey feel, but forget about making super quick revs untile the reciprocating assembly has been lightened up. If one looks at modern high performance dirt bikes they'd see slaper pistons,titanium valves, and very light cranks, these are great for performance but not overall engine longevity or roll on power. As far as haveing the air filter stuck out in open air flow, it is normally a bad idea. As a bike is moveing at speed air has a tendency to blow thru the front and out the back of the filter, avoiding going smoothly into the intake, this causes a lot of turbulence inside the filter that upsets carb jetting and could also allow less air to enter, ergo loss in top mph. To remedy this, put some sort of shield in front of the filter.

These are designed for cars to keep heat away and road dirt if the filter is mounted under the bumer, but hopefully you get the point. If anyone has seen an old roadster with the louvered covers over the filter/filters that is mostly why they are used. If someone uses a open fliter that is transversly mounted on a motorcyle, it works the same. Installing a shield should help with jetting problems. Try zip tying something in front of the filer to see if it helps. Or if someone wants, the entire filter can be covered except for the front, to get a ram air effect, but they'd have to route the carb bowl vent tubes to the enclousure or the set up won't work properly because the carb will still act on actuall atmospheric pressure. There are these nifty carb enclosures for cars with centrifical superchargers or turbochargers that encloses the entire carb to keep everything balanced. It is much easier to just have a filter in a box so the air is not turbulant going into the filter.
If anyone can make jelly beans from this, great, otherwise I got a little finger exercise.