Before you go changing too many things at once, if the header is glowing just from idling, then only make changes to the idle circuit because the needle and main have no effect on idle. Further, before you start tearing things apart, try to run the bike for a period of time with the choke (actually, it's an enricher circuit) pulled out. If the glowing goes away, then you should look to fatten up the idle jet.

Also, are you 100% sure that you don't have an air leak in the intake boot between the carb and the head? Make sure there is a good seal without any tears or misalignment.

I will double check the seal, the gas seems to come from where the gasket/boot meets the carb, not where the gasket meets the head. Will try the choke after work first!

I'd put the CV carb back on the bike for at least the break in period for the new piston (1500 miles) this is no time to be trying to tune your new carb. You need to be worried about seating the rings to the cylinder walls and you can't do that running the bike at 30 second of idling and no load and the bike not ever getting to temperature , you'll be more likely to glaze the cylinder walls and never achieve good compression.
    Drain the 87 octane gas that you've watered down with seafoam , and get some high octane fuel , fuel coming form the mouth of the carb may well be early signs of detonation (pinging) which tends to occur at low speeds ,  caused by your low octane fuel ,and can't always be heard or detected (fuel spitting out the mouth of the carb may be a sign). You have invested $$$ in the bike , what's a few bucks for gas?
    Smoke from the tailpipe and higher oil use is something you'll have until the rings do seat.(don't use synthetic oil ).

Checked my sight glass to make sure I wasnt losing oil and its got plenty, maybe even a little full. Definitely is darker though. I'll pickup some fresh oil tomorrow and do a drain to check oil for metal. Im currently running mobil1 racing 4t 10w-40. Anyone have a better suggestion?

Good to know! I originally got the mobil1 because it had the highest zddp of their offerings. Do you have a personal go to or are they all going to be more or less the same?

Heres a sound bite if you dont mind taking a listen, the engine noise is louder in the vid but it does sound pretty close to what Im hearing in person.

Edit: http://imgur.com/a/Cm4ErkN soundbite link that i didnt include 😑

If the rings aren't seating they're going to pass oil as if they were worn out , even more so it the oil is diluted with fuel , leaving behind a wet plug and carbon build up , make sense?

Its been a while so without going back and reading the entire thread; do you have a Wiseco 97 piston in your engine now ?  I saw a reference to it but did not see confirmation.  And what about the cam ?  Stock or upgraded ?

Does your engine continue to idle upon start and does the low throttle range functioning normally ?

I would expect the #20 pilot to function decently at least.
The #200 main could very well be too large, especially if no Wiseco &/or non stock cam.  On a stock engine I start with a #180-185 main.

Your short header is costing you power.  A stock header would work better for you until you can make a better one.

Been a busy bee. Header lengthened to about 32in. Oil changed to rotella t4 dino oil. Ran it with the new header and oil for 10 minutes with some hard revs and all glowing has stopped in the first bend of the header. Still hearing that almost clanging sound from the previous soundbite but it starts and runs easily with high octane gas. Is the sound just something to get used to or is it indicative of some other issue?